data download

Raw data (paper supplement section 2) description information download transcription regulatory network data readme composite dataset gene expression data readme cell cycle sporulation diauxic shift DNA damage stress response Back-tracking data (paper supplement section 3) description information download transcription factor presence data readme cell cycle sporulation diauxic shift DNA damage stress response condition-specific regulatory sub-networks readme cell cycle sporulation diauxic shift DNA damage stress response SANDY data (paper supplement sections 4 & 6) well-known statistics description information download global topological measures readme in-degree out-degree path length diameter clustering coefficient local network motifs readme single input motif multiple input motif feed-forward loop newly derived follow-on statistics description information download TF hub usage readme readme number of targets propensity values interaction interchange index readme index values TF usage overlap readme single usage pair-wise usage statistical validation random simulation description information download randomly simulated networks readme cell cycle sporulation diauxic shift DNA damage stress response global topological measures of randomly simulated networks readme cell cycle sporulation diauxic shift DNA damage stress response local network motifs of randomly simulated networks readme cell cycle sporulation diauxic shift DNA damage stress response sensitivity analysis description information download error-containing networks readme cell cycle sporulation diauxic shift DNA damage stress response global topological measures of error-containing networks readme cell cycle sporulation diauxic shift DNA damage stress response local network motifs of error-containing networks readme cell cycle sporulation diauxic shift DNA damage stress response Endogenous condition time-course data (paper supplement section 5) cell cycle description information download gene expression data readme early G1 phase late G1 phase S phase G2 phase M phase phase-specific regulatory sub-networks readme early G1 phase late G1 phase S phase G2 phase M phase TF time-course cluster readme readme number of targets propensity values sporulation description information download gene expression data readme metabolic phase early I phase early II phase early-mid phase middle phase mid-late phase late phase phase-specific regulatory sub-networks readme metabolic phase early I phase early II phase early-mid phase middle phase mid-late phase late phase TF time-course cluster readme readme number of targets propensity values Perl scripts description information download trace-back algorithm readme perl script global topological measures script readme perl script local network motifs script readme perl script hub propensities script readme perl script